A0A2P5FAY9 protein (Trema orientale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2P5FAY9

Sulfate transporter. (676 aa)

Predicted Functional Partners:

A0A2P5FBG8

0.729

A0A2P5FXW4

0.646

A0A2P5ES92

0.643

A0A2P5FVZ1

0.624

A0A2P5EVW7

0.620

A0A2P5CW72

0.600

TorGS3

0.589

TorGS4

0.589

TorGS1

0.589

A0A2P5FVH5

0.589

Your Current Organism:

Trema orientale

NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2P5CW72	A0A2P5ES92	A0A2P5CW72	A0A2P5ES92	Photosystem I PsaO.	Photosystem I PsaH, reaction centre subunit VI.	0.982
A0A2P5CW72	A0A2P5EVW7	A0A2P5CW72	A0A2P5EVW7	Photosystem I PsaO.	PsbP family.	0.837
A0A2P5CW72	A0A2P5FAY9	A0A2P5CW72	A0A2P5FAY9	Photosystem I PsaO.	Sulfate transporter.	0.600
A0A2P5CW72	A0A2P5FBG8	A0A2P5CW72	A0A2P5FBG8	Photosystem I PsaO.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.745
A0A2P5CW72	A0A2P5FXW4	A0A2P5CW72	A0A2P5FXW4	Photosystem I PsaO.	Photosystem II PsbO, manganese-stabilising.	0.561
A0A2P5ES92	A0A2P5CW72	A0A2P5ES92	A0A2P5CW72	Photosystem I PsaH, reaction centre subunit VI.	Photosystem I PsaO.	0.982
A0A2P5ES92	A0A2P5EVW7	A0A2P5ES92	A0A2P5EVW7	Photosystem I PsaH, reaction centre subunit VI.	PsbP family.	0.791
A0A2P5ES92	A0A2P5FAY9	A0A2P5ES92	A0A2P5FAY9	Photosystem I PsaH, reaction centre subunit VI.	Sulfate transporter.	0.643
A0A2P5ES92	A0A2P5FBG8	A0A2P5ES92	A0A2P5FBG8	Photosystem I PsaH, reaction centre subunit VI.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.867
A0A2P5ES92	A0A2P5FXW4	A0A2P5ES92	A0A2P5FXW4	Photosystem I PsaH, reaction centre subunit VI.	Photosystem II PsbO, manganese-stabilising.	0.610
A0A2P5EVW7	A0A2P5CW72	A0A2P5EVW7	A0A2P5CW72	PsbP family.	Photosystem I PsaO.	0.837
A0A2P5EVW7	A0A2P5ES92	A0A2P5EVW7	A0A2P5ES92	PsbP family.	Photosystem I PsaH, reaction centre subunit VI.	0.791
A0A2P5EVW7	A0A2P5FAY9	A0A2P5EVW7	A0A2P5FAY9	PsbP family.	Sulfate transporter.	0.620
A0A2P5EVW7	A0A2P5FBG8	A0A2P5EVW7	A0A2P5FBG8	PsbP family.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.995
A0A2P5EVW7	A0A2P5FVZ1	A0A2P5EVW7	A0A2P5FVZ1	PsbP family.	Complex 1 LYR protein; Belongs to the complex I LYR family.	0.963
A0A2P5EVW7	A0A2P5FXW4	A0A2P5EVW7	A0A2P5FXW4	PsbP family.	Photosystem II PsbO, manganese-stabilising.	0.986
A0A2P5FAY9	A0A2P5CW72	A0A2P5FAY9	A0A2P5CW72	Sulfate transporter.	Photosystem I PsaO.	0.600
A0A2P5FAY9	A0A2P5ES92	A0A2P5FAY9	A0A2P5ES92	Sulfate transporter.	Photosystem I PsaH, reaction centre subunit VI.	0.643
A0A2P5FAY9	A0A2P5EVW7	A0A2P5FAY9	A0A2P5EVW7	Sulfate transporter.	PsbP family.	0.620
A0A2P5FAY9	A0A2P5FBG8	A0A2P5FAY9	A0A2P5FBG8	Sulfate transporter.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.729