STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5FF20Pentatricopeptide repeat. (538 aa)    
Predicted Functional Partners:
A0A2P5E969
DSBA-like thioredoxin domain containing protein.
      
 0.452
A0A2P5EQM1
Tetratricopeptide-like helical domain containing protein.
  
   
 0.440
A0A2P5FN11
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
  0.428
A0A2P5D3A5
VPS9 domain containing protein.
      
 0.416
A0A2P5DUY0
FAS1 domain containing protein.
      
 0.410
A0A2P5C2M9
Poly [ADP-ribose] polymerase.
    
  0.408
A0A2P5FLQ4
HR-like lesion-inducer.
      
 0.406
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.