A0A2P5FT12 protein (Trema orientale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2P5FT12

Uncharacterized protein. (88 aa)

Predicted Functional Partners:

A0A2P5CSM8

0.655

A0A2P5FTL5

0.637

A0A2P5FWJ5

0.637

A0A2P5ACD0

0.604

A0A2P5F8N4

0.540

A0A2P5FR29

0.537

A0A2P5ELH5

0.535

A0A2P5F3Y3

0.535

A0A2P5EHD8

0.533

A0A2P5F3W4

0.532

Your Current Organism:

Trema orientale

NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2P5ACD0	A0A2P5FT12	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Uncharacterized protein.	0.604
A0A2P5ACD0	A0A2P5FTL5	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Glyoxalase I, conserved site.	0.508
A0A2P5ACD0	A0A2P5FWJ5	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Glyoxalase-like domain containing protein.	0.508
A0A2P5CSM8	A0A2P5FT12	MINDY_DUB domain-containing protein.	Uncharacterized protein.	0.655
A0A2P5CSM8	A0A2P5FTL5	MINDY_DUB domain-containing protein.	Glyoxalase I, conserved site.	0.415
A0A2P5CSM8	A0A2P5FWJ5	MINDY_DUB domain-containing protein.	Glyoxalase-like domain containing protein.	0.415
A0A2P5EHD8	A0A2P5ELH5	F-box domain containing protein.	Uncharacterized protein.	0.477
A0A2P5EHD8	A0A2P5F8N4	F-box domain containing protein.	Uncharacterized protein.	0.502
A0A2P5EHD8	A0A2P5FR29	F-box domain containing protein.	Protein EPIDERMAL PATTERNING FACTOR.	0.499
A0A2P5EHD8	A0A2P5FT12	F-box domain containing protein.	Uncharacterized protein.	0.533
A0A2P5ELH5	A0A2P5EHD8	Uncharacterized protein.	F-box domain containing protein.	0.477
A0A2P5ELH5	A0A2P5F3W4	Uncharacterized protein.	F-box domain containing protein.	0.523
A0A2P5ELH5	A0A2P5F3Y3	Uncharacterized protein.	F-box domain containing protein.	0.531
A0A2P5ELH5	A0A2P5F8N4	Uncharacterized protein.	Uncharacterized protein.	0.541
A0A2P5ELH5	A0A2P5FR29	Uncharacterized protein.	Protein EPIDERMAL PATTERNING FACTOR.	0.531
A0A2P5ELH5	A0A2P5FT12	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A2P5F3W4	A0A2P5ELH5	F-box domain containing protein.	Uncharacterized protein.	0.523
A0A2P5F3W4	A0A2P5F8N4	F-box domain containing protein.	Uncharacterized protein.	0.528
A0A2P5F3W4	A0A2P5FR29	F-box domain containing protein.	Protein EPIDERMAL PATTERNING FACTOR.	0.511
A0A2P5F3W4	A0A2P5FT12	F-box domain containing protein.	Uncharacterized protein.	0.532