STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5FYH9Voltage dependent potassium channel. (328 aa)    
Predicted Functional Partners:
A0A2P5D1K7
Ubiquitin-fold modifier-conjugating enzyme.
    
 
 0.570
A0A2P5F8Y2
Ubiquitin-fold modifier-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.570
A0A2P5AMR6
Cullin repeat-like-containing domain containing protein.
   
 0.555
A0A2P5CN21
Cullin, N-terminal; Belongs to the cullin family.
   
 0.555
A0A2P5CVN2
Uncharacterized protein.
   
 0.555
A0A2P5D187
Cullin, N-terminal; Belongs to the cullin family.
   
 0.555
A0A2P5EA15
Cullin, N-terminal; Belongs to the cullin family.
   
 0.555
A0A2P5ERZ7
Cullin, N-terminal; Belongs to the cullin family.
   
 0.555
A0A2P5FFS8
Cullin, N-terminal; Belongs to the cullin family.
   
 0.555
A0A2P5BIC2
43kDa postsynaptic protein.
    
 0.535
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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