STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiLPutative tonB-dependent receptor YbiL precursor. (762 aa)    
Predicted Functional Partners:
ybiX
PKHD-type hydroxylase; LacI family.
 
  
 0.965
entF
Enterobactin synthetase component F EntF.
 
  
 0.803
entB
Isochorismatase.
  
  
 0.783
fepA
Ferrienterobactin receptor FepA.
 
  
 0.656
AFJ45159.1
Putative TonB-dependent siderophore receptor.
  
  
 0.594
AFJ45162.1
Putative exogenous TonB-dependent siderophore receptor R4.
 
  
0.537
entE
2,3-dihydroxybenzoate-AMP ligase; (dihydroxybenzoic acid- activating enzyme) (enterobactin synthetase component E) (enterochelin synthase E).
  
    0.528
efeU
Ferrous iron permease EfeU; Also charges selenocystein tRNA with serine.
   
  
 0.477
entA
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
   
    0.465
AFJ46551.1
Putative lipopolysaccharide biosynthesis glycosyltransferase; Similar to WbbM protein.
  
     0.449
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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