Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oppAOligopeptide ABC transporter; Periplasmic oligopeptide-binding protein. (544 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter; Permease protein OppB.
 
 0.996
oppC
Oligopeptide ABC transporter; Permease protein OppC.
 
 
 0.995
oppD
Oligopeptide ABC transporter; ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.994
oppF
Oligopeptide ABC transporter; ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.993
mppA
Periplasmic murein peptide-binding protein.
  
 
 
0.906
gsiC
Glutathione ABC transporter; Permease protein GsiC.
 
 
 0.778
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.745
nikB
Nickel transport system permease protein NikB.
 
 
 0.744
dppF
Dipeptide transport ATP-binding protein DppF; Belongs to the ABC transporter superfamily.
 
 
 0.708
gsiD
Glutathione ABC transporter; Permease protein GsiD.
 
  
 0.691
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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