STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFJ47010.1GGDEF domain protein. (303 aa)    
Predicted Functional Partners:
AFJ47124.1
Hypothetical protein.
 
 
 0.871
AFJ45747.1
Putativ metal-dependent phosphohydrolase.
 
 
 0.826
yhjK
Putative diguanylate cyclase.
 
   0.820
AFJ46731.1
Diguanylate cyclase/phosphodiesterase withPAS/PAC sensor(s).
 
  
 0.814
AFJ46441.1
Putative cyclic diguanylate phosphodiesterase.
    0.810
yfeA
Putative diguanylate cyclase.
 
    0.804
AFJ46780.1
Diguanylate cyclase (GGDEF) domain protein.
  
     0.774
AFJ47550.1
Hypothetical protein.
 
     0.773
yfgF
Putative inner membrane protein with EAL domain.
 
    0.757
barA
Sensor histidine kinase/response regulator BarA.
 
 
 0.748
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.