Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFJ47021.1Hypothetical protein. (769 aa)    
Predicted Functional Partners:
AFJ47140.1
Phage tail tape measure protein; TP901 family.
 
    0.592
AFJ47020.1
Hypothetical protein.
       0.580
AFJ47139.1
Minor tail protein M.
  
    0.530
AFJ46865.1
Hypothetical protein; Belongs to the UPF0181 family.
  
     0.506
yfeZ
Putative inner membrane protein; HK97 family.
  
     0.500
AFJ47130.1
Host specificity protein J.
  
    0.477
AFJ47138.1
Phage minor tail protein L.
   
    0.458
AFJ47019.1
Two component transcriptional regulator; LuxR family.
       0.433
AFJ47137.1
Tail assembly protein K.
  
    0.433
AFJ48052.1
Hypothetical protein.
   
    0.427
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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