Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFJ47027.1TRAP-type transport system substrate-binding protein; MFS family. (353 aa)    
Predicted Functional Partners:
AFJ47026.1
TRAP-type transport system permease component.
 
 
 0.997
AFJ48502.1
Putative TRAP dicarboxylate transporter- DctM subunit.
  
   
 0.587
AFJ48504.1
Putative TRAP dicarboxylate transporter; DctP subunit.
  
   
 0.554
AFJ48563.1
Putative TRAP transporter; DctM subunit.
  
   
 0.554
AFJ48565.1
Putative TRAP dicarboxylate transporter; DctP subunit.
  
   
 0.490
AFJ47028.1
Hypothetical protein.
       0.483
AFJ48564.1
Putative tripartite ATP-independent periplasmic transporter; DctQ component.
  
     0.401
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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