Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFJ47028.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
AFJ46250.1
Conserved hypothetical polysulfide reductase-like protein.
  
     0.563
AFJ46251.1
Putative molybdopterin oxidoreductase family protein; Molybdopterin binding subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.553
AFJ48493.1
Putative signal transduction response regulator.
  
     0.504
AFJ46921.1
Transmembrane pair domain protein.
 
     0.496
AFJ47026.1
TRAP-type transport system permease component.
       0.483
AFJ47027.1
TRAP-type transport system substrate-binding protein; MFS family.
       0.483
glaH
Putative protein csiD; Acts as an alpha-ketoglutarate-dependent dioxygenase catalyzing hydroxylation of glutarate (GA) to L-2-hydroxyglutarate (L2HG). Functions in a L-lysine degradation pathway that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.
  
     0.479
yihL
Transcriptional regulator; GntR family.
       0.438
yihM
AP endonuclease; Family 2.
       0.438
nrfB
Cytochrome c-type protein NrfB precursor.
  
     0.406
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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