Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
yihLTranscriptional regulator; GntR family. (239 aa)    
Predicted Functional Partners:
yihM
AP endonuclease; Family 2.
 
  
 0.964
nadR
Transcriptional regulator NadR.
   
  
 0.912
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.630
yihN
Inner membrane protein with sugar phosphate permease domain.
 
  
 0.623
nagE
PTS system protein; N-acetylglucosamine-specific IIABC component.
  
  
 0.621
hpaA
4-hydroxyphenylacetate catabolism regulatory protein HpaA; AraC family.
 
  
 0.614
AFJ45210.1
Hypothetical protein; Putative transcriptional regulator.
  
  
 0.576
AFJ48154.1
Putative transcriptional regulator.
  
  
 0.576
rhaS
L-rhamnose operon regulatory protein.
  
  
 0.545
rhaR
HTH-type transcriptional activator in L-rhamnose operon.
  
  
 0.545
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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