Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yihNInner membrane protein with sugar phosphate permease domain. (420 aa)    
Predicted Functional Partners:
yihM
AP endonuclease; Family 2.
 
    0.920
AFJ46923.1
Putative OmpT outer membrane protease.
  
     0.637
yihL
Transcriptional regulator; GntR family.
 
  
 0.623
AFJ47898.1
Hypothetical protein.
  
     0.520
AFJ47299.1
Putative phage protein.
  
     0.481
AFJ45999.1
Hypothetical protein.
  
     0.465
AFJ46856.1
Putative membrane protein.
  
     0.457
cutC-2
Putative pyruvate formate-lyase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
  
    0.437
AFJ46818.1
Copper resistance D domain protein.
  
     0.403
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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