Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFJ47040.1Endonuclease/exonuclease/phosphatase family protein. (300 aa)    
Predicted Functional Partners:
AFJ45154.1
Hypothetical protein; Similar to putative capsular polysaccharide bisynthesis protein.
  
     0.632
AFJ48866.1
Putative membrane protein.
 
     0.626
AFJ47290.1
Putative replication protein O of bacteriophage.
  
     0.619
AFJ47652.1
Hypothetical protein.
  
     0.578
csdA
Cysteine sulfinate desulfinase; PfkB domain protein.
    
   0.565
sufS
Selenocysteine lyase; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.
    
   0.565
AFJ47039.1
Putative membrane protein.
 
     0.548
AFJ48156.1
Hypothetical protein.
  
     0.536
AFJ47195.1
Putative sugar permease.
  
     0.525
AFJ45878.1
Putative transcriptional regulator protein; TetR family like.
  
     0.520
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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