Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydbHConserved hypothetical membrane protein; Dependent on cyclic AMP and H-NS. (881 aa)    
Predicted Functional Partners:
AFJ47061.1
Putative lipoprotein.
 
   
 0.905
ydbL
Putative secreted protein.
 
   
 0.891
asmA
Putative outer membrane assembly protein.
  
   
 0.811
yojN
Putative sensor-like histidine kinase YojN; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
    0.772
AFJ48294.1
Hypothetical protein.
  
     0.771
AFJ45146.1
Putative lipoprotein.
  
     0.767
rof
Protein Rof.
  
     0.767
AFJ45788.1
Hypothetical protein.
  
     0.765
yniB
Putative inner membrane protein.
  
     0.763
AFJ45260.1
Hypothetical protein.
  
     0.762
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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