STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFJ47113.1Bacteriophage N4 adsorption protein B. (754 aa)    
Predicted Functional Partners:
AFJ47112.1
Bacteriophage N4 adsorption protein A; Part.
  
  
 0.841
AFJ47111.1
Thioesterase superfamily protein.
       0.590
AFJ48925.1
Dethiobiotin synthetase; Surface polymer ligase WaaL.
 
   
 0.587
sseB
Enhanced serine sensitivity.
  
 
 0.550
arnD
Hypothetical protein; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.
 
  
 0.532
AFJ48287.1
Putative polysaccharide deacetylase lipoprotein.
 
  
 0.531
arcB
Aerobic respiration control sensor protein ArcB; AraC family.
  
 
 0.513
AFJ47110.1
Putative acetyltransferase; GNAT family.
       0.490
AFJ45896.1
Putative creatinase; DksA/TraR family.
  
  
 0.437
csgG
Curli production assembly/transport component CsgG.
  
     0.437
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.