STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFJ47347.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
yhfX
Alanine racemase family.
       0.783
yhfW
Metalloenzyme domain protein.
       0.779
yhfV
Phosphotriesterase-like protein.
       0.774
yhfT
Putative transport system permease protein.
       0.722
AFJ47343.1
Hypothetical protein.
       0.722
AFJ47348.1
Hypothetical protein.
       0.655
AFJ47349.1
Putative inner membrane protein.
       0.655
malX
PTS system protein; Maltose and glucose-specific IIABC component.
  
 
 0.616
AFJ47341.1
Hypothetical protein.
       0.614
nagE
PTS system protein; N-acetylglucosamine-specific IIABC component.
  
 
 0.611
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.