STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFJ47775.1Acid phosphatase. (249 aa)    
Predicted Functional Partners:
yigB
HAD-superfamily hydrolase.
 
  
  0.915
hpaC
(4-HPA 3-monooxygenase small component) (Flavin:NADHreductase).
  
  
  0.911
aphA
Class B acid phosphatase precursor; Belongs to the class B bacterial acid phosphatase family.
     
 0.903
ribC
Riboflavin synthase alpha chain.
    
  0.900
AFJ47847.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
     
  0.900
ssuE
Sulfate starvation-induced protein 4.
     
  0.900
ribF
Riboflavin biosynthesis protein ribF; '[Includes: Riboflavin kinase (Flavokinase); FMN adenylyltransferase (FADpyrophosphorylase) (FAD synthetase)]'; Belongs to the ribF family.
    
  0.900
fre
NAD(P)H-flavin reductase.
   
 
  0.900
AFJ46794.1
Hypothetical protein.
  
  
 0.696
AFJ47451.1
Conserved outer membrane protein.
  
    0.533
Your Current Organism:
Shimwellia blattae
NCBI taxonomy Id: 630626
Other names: Escherichia blattae CIP 104942, Escherichia blattae DSM 4481, Escherichia blattae NBRC 105725, S. blattae DSM 4481 = NBRC 105725, Shimwellia blattae CIP 104942, Shimwellia blattae DSM 4481, Shimwellia blattae DSM 4481 = NBRC 105725, Shimwellia blattae NBRC 105725, Shimwellia blattae NBRC 105725 = DSM 4481
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