Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFJ45271.1 | dcuR | EBL_c01350 | EBL_c34140 | Similar to MFS family protein. | Transcriptional regulatory protein DcuR. | 0.537 |
AFJ45271.1 | dcuS | EBL_c01350 | EBL_c34130 | Similar to MFS family protein. | Sensor protein DcuS. | 0.465 |
AFJ45271.1 | dpiB | EBL_c01350 | EBL_c06480 | Similar to MFS family protein. | Sensor histidine kinase DpiB. | 0.492 |
AFJ45271.1 | rssB | EBL_c01350 | EBL_c18940 | Similar to MFS family protein. | Response regulator receiver domain protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.414 |
AFJ48472.1 | dcuR | EBL_c34120 | EBL_c34140 | Putative N-acetylmuramic acid 6-phosphate etherase. | Transcriptional regulatory protein DcuR. | 0.503 |
AFJ48472.1 | dcuS | EBL_c34120 | EBL_c34130 | Putative N-acetylmuramic acid 6-phosphate etherase. | Sensor protein DcuS. | 0.506 |
arcB | barA | EBL_c03680 | EBL_c08410 | Aerobic respiration control sensor protein ArcB; AraC family. | Sensor histidine kinase/response regulator BarA. | 0.987 |
arcB | dcuR | EBL_c03680 | EBL_c34140 | Aerobic respiration control sensor protein ArcB; AraC family. | Transcriptional regulatory protein DcuR. | 0.469 |
arcB | rssB | EBL_c03680 | EBL_c18940 | Aerobic respiration control sensor protein ArcB; AraC family. | Response regulator receiver domain protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.799 |
barA | arcB | EBL_c08410 | EBL_c03680 | Sensor histidine kinase/response regulator BarA. | Aerobic respiration control sensor protein ArcB; AraC family. | 0.987 |
barA | dcuR | EBL_c08410 | EBL_c34140 | Sensor histidine kinase/response regulator BarA. | Transcriptional regulatory protein DcuR. | 0.465 |
barA | dpiB | EBL_c08410 | EBL_c06480 | Sensor histidine kinase/response regulator BarA. | Sensor histidine kinase DpiB. | 0.417 |
barA | rssB | EBL_c08410 | EBL_c18940 | Sensor histidine kinase/response regulator BarA. | Response regulator receiver domain protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.738 |
dcuR | AFJ45271.1 | EBL_c34140 | EBL_c01350 | Transcriptional regulatory protein DcuR. | Similar to MFS family protein. | 0.537 |
dcuR | AFJ48472.1 | EBL_c34140 | EBL_c34120 | Transcriptional regulatory protein DcuR. | Putative N-acetylmuramic acid 6-phosphate etherase. | 0.503 |
dcuR | arcB | EBL_c34140 | EBL_c03680 | Transcriptional regulatory protein DcuR. | Aerobic respiration control sensor protein ArcB; AraC family. | 0.469 |
dcuR | barA | EBL_c34140 | EBL_c08410 | Transcriptional regulatory protein DcuR. | Sensor histidine kinase/response regulator BarA. | 0.465 |
dcuR | dcuS | EBL_c34140 | EBL_c34130 | Transcriptional regulatory protein DcuR. | Sensor protein DcuS. | 0.997 |
dcuR | dpiB | EBL_c34140 | EBL_c06480 | Transcriptional regulatory protein DcuR. | Sensor histidine kinase DpiB. | 0.874 |
dcuR | rssB | EBL_c34140 | EBL_c18940 | Transcriptional regulatory protein DcuR. | Response regulator receiver domain protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.485 |
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