STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppdDHypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein; Belongs to the N-Me-Phe pilin family. (144 aa)    
Predicted Functional Partners:
gspE
Type II/IV secretion system family protein.
  
  
 0.891
hofC
Type II secretion system (T2SS), F family protein.
 
   
 0.749
CH53_627
TPR repeat family protein.
  
     0.712
CH53_2616
ygfB_yecA: yecA family protein; Belongs to the UPF0149 family.
  
     0.659
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
 
   
 0.647
nadC
nadC: nicotinate-nucleotide diphosphorylase; Belongs to the NadC/ModD family.
  
    0.572
CH53_1890
Hypothetical protein.
  
     0.558
outO
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.539
mltB
mltB: lytic murein transglycosylase B.
 
     0.537
CH53_2688
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
 
 
 0.527
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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