STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgrR_1Bacterial extracellular solute-binding s, 5 Middle family protein; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain. (553 aa)    
Predicted Functional Partners:
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.719
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.702
CH53_2025
Hypothetical protein.
  
     0.684
yhaH
Hypothetical protein.
  
     0.668
yfeE
yniB-like family protein.
  
     0.652
bssS
bssS family protein.
  
     0.648
yceB
Hypothetical protein.
  
     0.601
yobD
Hypothetical protein.
  
     0.595
uspB
Universal stress protein B.
  
     0.566
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.559
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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