STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjjBHypothetical protein. (155 aa)    
Predicted Functional Partners:
yjjP
Hypothetical protein.
  
 0.992
dcuC
dcuC: transporter, anaerobic C4-dicarboxylate uptake C family protein.
  
     0.647
yqfB
ASCH domain protein; Belongs to the UPF0267 family.
  
     0.637
folA
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
       0.549
rhtC_1
lysE type translocator family protein.
       0.519
ycdZ
Inner membrane protein ycdZ.
  
     0.514
CH53_4418
Hypothetical protein; Belongs to the UPF0227 family.
  
     0.483
yciN
Protein yciN.
  
     0.412
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.408
CH53_1707
yidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain protein.
 
    0.406
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.