Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ctpFATPase_P-type: HAD ATPase, P-type, IC family protein. (908 aa)    
Predicted Functional Partners:
mgtC
mgtC family protein.
 
 
 0.653
prcA
Proconvertase P-domain protein.
   
 
 0.644
sapB_1
mgtC family protein.
 
 
 0.485
ytxA
Pertussis toxin, subunit 1 family protein.
   
    0.469
oprF_1
ompA family protein.
     
 0.468
CH53_1096
Hypothetical protein.
       0.442
yfiN
GGDEF: diguanylate cyclase domain protein.
       0.442
CH53_3113
Cytotoxic family protein.
   
  
 0.441
pta-2
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.417
copA_3
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
0.404
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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