STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_1Helix-turn-helix domain protein; Activates expression of the rhaBAD and rhaT operons. (273 aa)    
Predicted Functional Partners:
rhaR
HTH-type transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
 
 
0.744
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
  
  
 0.721
pocR
Helix-turn-helix domain protein.
  
     0.660
ftrA
Helix-turn-helix domain protein.
 
 
 0.639
gltB
Glutamine amidotransferases class-II family protein.
     
 0.605
cobB-2
Sir2 family protein; Belongs to the sirtuin family. Class III subfamily.
  
    0.586
flgG
flgG_G_neg: flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.563
rhaS_2
Helix-turn-helix domain protein.
  
   0.557
rob
Right origin-binding protein.
  
   0.556
rob_2
Helix-turn-helix domain protein.
 
 
 0.551
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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