STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1122Hypothetical protein. (53 aa)    
Predicted Functional Partners:
yjbJ
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.914
osmY_2
BON domain protein.
  
    0.815
osmY_1
BON domain protein.
  
    0.796
ygdR
Hypothetical protein.
   
    0.762
CH53_1121
Patatin-like phospholipase family protein.
     
 0.736
osmY_3
BON domain protein.
  
    0.641
yjjV
tatD related DNase family protein.
       0.634
ivy
Inhibitor of vertebrate lysozyme family protein.
  
  
 0.605
yiaH
Inner membrane protein YiaH; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
   
    0.529
CH53_3309
ABC-2 type transporter family protein.
  
    0.469
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.