STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scrAPTS-II-BC-sucr: PTS system, sucrose-specific IIBC component. (456 aa)    
Predicted Functional Partners:
scrB
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
  0.995
sacA
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
  0.978
crr
Glucose-specific phosphotransferase enzyme IIA component.
   0.950
bfrA
Glycosyl hydrolases 43 family protein.
 
 
  0.932
ptsH
Phosphocarrier protein HPr.
   
 
  0.901
arbG
CAT RNA binding domain protein.
 
 
   0.758
scrY
Sucrose porin.
 
     0.658
scrR
Fruct_sucro_rep: D-fructose-responsive transcription factor family protein.
       0.630
dhaR
PAS fold family protein.
  
    0.626
aglA
PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component domain protein.
  
    0.565
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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