Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
scrRFruct_sucro_rep: D-fructose-responsive transcription factor family protein. (344 aa)    
Predicted Functional Partners:
dhaR
PAS fold family protein.
  
    0.777
ascG_1
Bacterial regulatory s, lacI family protein.
  
     0.772
cytR_2
Bacterial regulatory s, lacI family protein.
  
     0.771
ptsH
Phosphocarrier protein HPr.
    
 
 0.736
scrY
Sucrose porin.
 
   
 0.680
gltB
Glutamine amidotransferases class-II family protein.
    
 
 0.661
scrB
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
    0.634
scrA
PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component.
       0.630
fryA
PEP-utilizing enzyme, mobile domain protein.
   
 
 0.605
scrK_1
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.582
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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