STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
baeS_2HAMP domain protein. (469 aa)    
Predicted Functional Partners:
basR_2
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 0.996
CH53_1169
Tripartite tricarboxylate transporter TctB family protein.
 
   
 0.870
CH53_1168
Tripartite tricarboxylate transporter receptor family protein.
 
   
 0.835
arcB
Sensory box protein.
  
 
 0.797
barA_2
Sensory box protein.
  
 
 0.781
basR_1
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.773
CH53_1170
Tripartite tricarboxylate transporter TctA family protein.
 
   
 0.743
phoP
Transcriptional regulatory protein phoP.
 
 
 0.693
baeR
Response regulator.
 
 
 0.644
blrA
Response regulator.
 
 
 0.642
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.