STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1170Tripartite tricarboxylate transporter TctA family protein. (505 aa)    
Predicted Functional Partners:
CH53_1168
Tripartite tricarboxylate transporter receptor family protein.
 
  
 0.988
CH53_1169
Tripartite tricarboxylate transporter TctB family protein.
 
  
 0.988
baeS_2
HAMP domain protein.
 
   
 0.743
basR_2
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
     0.599
lptC
LPS export ABC transporter periplasmic protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
      
 0.545
yebN
Hypothetical protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
      
 0.541
CH53_3454
Tripartite ATP-independent periplasmic transporter, DctQ component family protein.
  
   
 0.459
CH53_1171
Hypothetical protein.
       0.437
dpiA
Transcriptional regulatory protein DpiA.
 
     0.429
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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