STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1176Winged helix-turn-helix DNA-binding family protein. (81 aa)    
Predicted Functional Partners:
ydgH
Protein ydgH.
  
     0.692
mlaB
STAS domain protein.
  
     0.587
CH53_1264
Putative uPF0306 protein YPO3467/y0717/YP_0616; Belongs to the UPF0306 family.
  
     0.572
CH53_1300
Mu DNA-binding domain protein.
 
     0.559
hha
Hemolysin expression-modulating protein.
  
     0.547
CH53_1175
DNA-binding domain protein.
       0.543
holE
DNA polymerase III subunit theta.
  
     0.535
holE-2
DNA polymerase III subunit theta.
  
     0.532
pagP
Antimicrobial peptide resistance and lipid A acylation PagP family protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.505
CH53_2026
Hypothetical protein.
  
     0.491
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.