STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1218Prophage CP4-57 regulatory family protein. (66 aa)    
Predicted Functional Partners:
CH53_1216
Hypothetical protein.
 
  
 0.727
CH53_1233
Phage integrase family protein.
 
   
 0.687
intB
Phage integrase.
 
   
 0.680
CH53_3501
Phage integrase family protein.
 
   
 0.672
CH53_1215
Phage integrase family protein.
 
   
 0.668
CH53_4229
Phage integrase family protein.
 
  
 0.668
intS_3
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
   
 0.657
CH53_1844
Zinc-binding domain of primase-helicase family protein.
 
  
 0.621
intS_1
Hypothetical protein; Belongs to the 'phage' integrase family.
 
   
 0.619
CH53_1219
Hypothetical protein.
       0.543
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.