STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1264Putative uPF0306 protein YPO3467/y0717/YP_0616; Belongs to the UPF0306 family. (147 aa)    
Predicted Functional Partners:
ydgH
Protein ydgH.
  
     0.689
mlaB
STAS domain protein.
  
     0.632
CH53_1301
Winged helix-turn-helix DNA-binding family protein.
  
     0.610
CH53_2289
yqjK-like family protein.
  
     0.580
mukB
Hypothetical protein; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.578
CH53_1176
Winged helix-turn-helix DNA-binding family protein.
  
     0.572
holE-2
DNA polymerase III subunit theta.
  
     0.572
CH53_1262
Semialdehyde dehydrogenase, NAD binding domain protein.
  
    0.567
pgpB
PAP2 superfamily protein.
  
     0.563
holE
DNA polymerase III subunit theta.
  
     0.543
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.