STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1300Mu DNA-binding domain protein. (115 aa)    
Predicted Functional Partners:
CH53_1301
Winged helix-turn-helix DNA-binding family protein.
 
     0.821
CH53_267
DEAD/DEAH box helicase family protein.
  
    0.730
CH53_1363
Hypothetical protein.
  
     0.716
priC
Primosomal replication priB and priC family protein.
  
     0.711
CH53_1011
Hypothetical protein.
  
     0.661
mlaB
STAS domain protein.
  
     0.654
rcsA_2
Bacterial regulatory s, luxR family protein.
  
     0.638
ydgH
Protein ydgH.
  
     0.621
CH53_1299
Mu DNA-binding domain protein.
      
0.590
lpoB
Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.587
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.