STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgH_1Hypothetical protein. (87 aa)    
Predicted Functional Partners:
CH53_1113
Bacterial virulence factor hemolysin family protein.
  
     0.771
bhsA
Multiple stress resistance protein BhsA.
  
     0.768
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.752
aaeX
Hypothetical protein.
  
   
 0.748
CH53_672
Haloacid dehalogenase-like hydrolase family protein.
  
     0.744
holD
DNA polymerase III subunit psi; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.736
mliC
Membrane-bound lysozyme-inhibitor of c-type lysozyme family protein.
  
     0.735
pspG
phageshock_pspG: phage shock protein G.
  
     0.729
yciC
Hypothetical protein.
  
     0.727
helD
Hypothetical protein; uvrD/REP helicase N-terminal domain protein.
  
     0.724
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.