STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1321Hypothetical protein; Opacity-associated A N-terminal motif family protein. (260 aa)    
Predicted Functional Partners:
CH53_3150
cyd_oper_ybgE: cyd operon protein YbgE.
  
     0.773
yecM
Protein yecM.
  
    0.768
atpI
ATP synthase I chain family protein.
  
     0.762
priC
Primosomal replication priB and priC family protein.
  
     0.761
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.758
uspB
Universal stress protein B.
  
     0.757
ycfL
Hypothetical protein.
  
     0.756
yciC
Hypothetical protein.
  
     0.746
CH53_263
yejG-like family protein.
  
     0.745
CH53_1113
Bacterial virulence factor hemolysin family protein.
  
     0.740
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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