STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kefA_1Mechanosensitive ion channel family protein. (1098 aa)    
Predicted Functional Partners:
lpp
Major outer membrane lipoprotein Lpp.
  
     0.709
hspQ
Hemimethylated DNA binding domain protein; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.
  
   
 0.700
ompF
Gram-negative porin family protein.
  
     0.696
ompC2
Gram-negative porin family protein; Belongs to the Gram-negative porin family.
  
     0.680
ompD
Gram-negative porin family protein.
  
     0.678
ompC
Outer membrane protein C; Belongs to the Gram-negative porin family.
  
     0.675
polA
Pola: DNA polymerase I.
  
  
 0.671
hha
Hemolysin expression-modulating protein.
  
     0.626
holE
DNA polymerase III subunit theta.
  
     0.624
zapA
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
 
   
 0.614
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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