Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CH53_136Hypothetical protein. (182 aa)    
Predicted Functional Partners:
CH53_137
L,D-transpeptidase catalytic domain protein.
 
   
 0.882
CH53_135
Beta-lactamase superfamily domain protein.
  
    0.836
mepA
Penicillin-insensitive murein endopeptidase family protein; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.704
attM
N-acyl homoserine lactonase AttM.
  
    0.575
ytnP
Beta-lactamase superfamily domain protein.
 
    0.526
CH53_2785
L,D-transpeptidase catalytic domain protein.
  
    0.447
CH53_2671
Metallo-beta-lactamase superfamily protein.
  
    0.445
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.445
CH53_989
Hypothetical protein; Belongs to the UPF0231 family.
  
     0.441
ycjX
Hypothetical protein.
  
     0.438
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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