STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fdhF_2Fdh-alpha: formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (715 aa)    
Predicted Functional Partners:
hyfG
Nickel-dependent hydrogenase family protein.
 
 
 0.969
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit.
  
 
 0.965
fdxH
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
  
 
 0.945
CH53_1681
Molybdopterin oxidoreductase Fe4S4 domain protein.
 
 
 0.935
napF
Ferredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
 
 
 0.929
CH53_495
4Fe-4S binding domain protein.
 
 
 0.928
fhs
Formate--tetrahydrofolate ligase family protein; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.913
norW
Nitric oxide reductase FlRd-NAD(+) reductase; Belongs to the FAD-dependent oxidoreductase family.
  
 0.913
fdnG
formate-DH-alph: formate dehydrogenase-N alpha subunit.
 
 
0.910
hydN_2
4Fe-4S dicluster domain protein.
 
 
 0.907
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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