STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flhB1flhB_rel_III: type III secretion, YscU/HrpY family protein. (357 aa)    
Predicted Functional Partners:
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
  
 0.992
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
  
 0.986
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
  
 0.985
ssaV
hrcV: type III secretion, HrcV family protein.
 
  
 0.963
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.887
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.878
yscN
fliI_yscN: ATPase, FliI/YscN family protein.
 
  
 0.870
fliR
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
     0.862
fliI
fliI_clade1: flagellar protein export ATPase FliI.
 
  
 0.829
invG
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
  
 0.815
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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