STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epaRfliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT. (264 aa)    
Predicted Functional Partners:
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.999
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.997
flhB1
flhB_rel_III: type III secretion, YscU/HrpY family protein.
 
  
 0.993
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.993
ssaV
hrcV: type III secretion, HrcV family protein.
 
 
 0.991
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 
 0.961
invG
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
 
 0.952
yscN
fliI_yscN: ATPase, FliI/YscN family protein.
 
  
 0.916
gspD
type_II_gspD: type II secretion system protein D.
  
 
 0.915
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.899
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.