STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CH53_1416hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family. (207 aa)    
Predicted Functional Partners:
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ.
  
  
 0.960
yscN
fliI_yscN: ATPase, FliI/YscN family protein.
  
 
 0.915
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
  
 0.900
CH53_1415
type_III_tyeA: type III secretion effector delivery regulator, TyeA family.
     
 0.857
fliI
fliI_clade1: flagellar protein export ATPase FliI.
  
 
 0.854
CH53_1417
Type III secretion system subunit.
       0.820
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.816
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.791
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
  
 
 0.790
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
  
 0.779
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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