STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prgKIII_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family. (243 aa)    
Predicted Functional Partners:
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.987
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.986
invG
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
 
 0.980
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.979
ssaV
hrcV: type III secretion, HrcV family protein.
 
 
 0.977
CH53_1429
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
 
  
 0.914
CH53_1416
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
  
  
 0.900
sseC
Secretion system effector C (SseC) like family protein.
  
  
 0.899
flhB1
flhB_rel_III: type III secretion, YscU/HrpY family protein.
 
  
 0.887
CH53_1425
Tetratricopeptide repeat family protein.
 
  
 0.882
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.