STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1420Hypothetical protein. (107 aa)    
Predicted Functional Partners:
eprI
III_needle: type III secretion apparatus needle protein.
  
  
 0.937
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.877
livK1
Periplasmic binding domain protein.
   
    0.876
rhaS_2
Helix-turn-helix domain protein.
       0.773
ulaA
PTS system sugar-specific permease component family protein.
   
    0.766
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
     
 0.685
CH53_1419
Hypothetical protein; yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain.
       0.634
hisE
histidine_hisI: phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family.
   
    0.633
CH53_1417
Type III secretion system subunit.
       0.623
CH53_1416
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
       0.622
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.