STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_2Helix-turn-helix domain protein. (235 aa)    
Predicted Functional Partners:
CH53_1420
Hypothetical protein.
       0.773
eprI
III_needle: type III secretion apparatus needle protein.
       0.773
soxS
Helix-turn-helix domain protein.
  
     0.677
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
  
 0.654
CH53_1419
Hypothetical protein; yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain.
       0.633
araC
Helix-turn-helix domain protein.
  
   
 0.595
rhaR
HTH-type transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
  
 
 0.587
CH53_1416
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
  
  
 0.584
CH53_1415
type_III_tyeA: type III secretion effector delivery regulator, TyeA family.
       0.580
CH53_1417
Type III secretion system subunit.
       0.580
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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