STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1433type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family. (404 aa)    
Predicted Functional Partners:
sseD
Putative methyl-accepting chemotaxis protein.
  
  
 0.920
invG
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
  
 0.917
sseB
espA-like secreted family protein.
  
  
 0.904
CH53_1415
type_III_tyeA: type III secretion effector delivery regulator, TyeA family.
  
  
 0.896
ssaV
hrcV: type III secretion, HrcV family protein.
  
  
 0.888
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
    
 
 0.877
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
  
  
 0.868
sseC
Secretion system effector C (SseC) like family protein.
  
  
 0.842
flhB1
flhB_rel_III: type III secretion, YscU/HrpY family protein.
  
  
 0.807
CH53_1426
Type III secretion system regulator family protein.
  
  
 0.774
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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