STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
invGtype_III_yscC: type III secretion outer membrane pore, YscC/HrcC family. (493 aa)    
Predicted Functional Partners:
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.995
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.952
fliQ_2
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.947
CH53_1433
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
  
  
 0.917
CH53_1429
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
 
  
 0.874
ssaV
hrcV: type III secretion, HrcV family protein.
 
 
 0.873
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.854
araC
Helix-turn-helix domain protein.
   
  
 0.837
flhB1
flhB_rel_III: type III secretion, YscU/HrpY family protein.
 
  
 0.816
outC
Type IV pilus biogenesis family protein.
  
 
 0.787
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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