STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuCBinding--dependent transport system inner membrane component family protein. (293 aa)    
Predicted Functional Partners:
tauB
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
 
 0.999
tauA
taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein.
 
 
 0.999
tauD
Alpha-ketoglutarate-dependent taurine dioxygenase.
 
 
 0.994
limB
Oxido_grp_1: luciferase oxidoreductase, group 1 family protein.
  
  
 0.466
CH53_911
Hypothetical protein.
  
  
 0.466
eamB_1
lysE type translocator family protein.
       0.460
yddE
phzF_: phenazine biosynthesis, PhzF family protein.
       0.459
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.