STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eamB_1lysE type translocator family protein. (200 aa)    
Predicted Functional Partners:
yddE
phzF_: phenazine biosynthesis, PhzF family protein.
       0.762
CH53_1515
Alpha/beta hydrolase family protein.
       0.558
CH53_1516
Hypothetical protein; Belongs to the UPF0270 family.
       0.549
tauA
taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein.
       0.471
tauB
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
       0.469
tauD
Alpha-ketoglutarate-dependent taurine dioxygenase.
       0.466
ssuC
Binding--dependent transport system inner membrane component family protein.
       0.460
rhtB
Homoserine/homoserine lactone efflux protein.
  
     0.421
gldA_2
Iron-containing alcohol dehydrogenase family protein.
     
 0.404
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.