STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cirA_1tonB-copper: TonB-dependent copper receptor. (680 aa)    
Predicted Functional Partners:
tonB
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.681
CH53_1530
Hypothetical protein.
       0.616
CH53_1923
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
 
 0.591
rcsB_2
Bacterial regulatory s, luxR family protein.
  
 
   0.556
CH53_3902
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
 
 0.537
CH53_4010
terB-N family protein.
  
     0.497
focC_3
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
     0.464
papD_3
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
     0.444
yapE
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
     0.442
CH53_2349
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.442
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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