STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_1566Phosphoribosyl transferase domain protein. (227 aa)    
Predicted Functional Partners:
dprA
dprA: DNA protecting protein DprA.
 
 
 0.919
CH53_152
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.871
comM
Sigma-54 interaction domain protein.
 
  
 0.848
tyrA
T-protein.
  
  
 0.705
CH53_2977
Radc: DNA repair RadC family protein.
 
    0.699
radC_2
Radc: DNA repair RadC family protein; Belongs to the UPF0758 family. YicR subfamily.
 
    0.697
nfuA
fe/S biogenesis protein nfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
     
 0.675
CH53_2276
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.670
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.657
kpsT
ABC transporter family protein.
   
    0.639
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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