STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolBmyo_inos_iolB: 5-deoxy-glucuronate isomerase. (274 aa)    
Predicted Functional Partners:
iolD
myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
 
 0.998
iolC
myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase.
 
 
 0.998
iolE
Myo-inosose-2 dehydratase; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol). Belongs to the IolE/MocC family.
 
  
 0.957
idh
Hypothetical protein; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
  
 0.915
gfo
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
 
  
 0.909
mmsA
MMSDH: methylmalonate-semialdehyde dehydrogenase.
  
 0.881
iolI
Xylose isomerase-like TIM barrel family protein.
 
    0.860
ybbH_3
SIS domain protein.
 
   
 0.775
mviM
Oxidoreductase, NAD-binding Rossmann fold family protein.
 
  
 0.695
afr
Oxidoreductase, NAD-binding Rossmann fold family protein.
  
  
 0.651
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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